AlphaPeel

AlphaPeel is program to call, impute, and phase genotypes using a pedigree in potentially very large livestock populations. A complete description of the methods is given in Whalen et al. (2018; http://dx.doi.org/10.1186/s12711-018-0438-2).

• Introduction
  • Availability
  • Conditions of use
  • Disclaimer
• Getting Started
  • Install AlphaPeel
  • An example
• Usage
  • Program options
  • File formats
• Algorithm Overview
  • Peeling basics
  • Specific code comments
  • Function explanation
• Contribution and Development Guide
  • Fork the repository
  • Clone your forked repository
  • Make changes in your clone
  • Update submodules?
  • Create a pull request
  • Update the version of the package to publish the package
• Changelog
  • [1.3.0] - 2026-02-05
  • [1.2.0] - 2025-03-21
  • [1.1.6] - 2024-10-22
  • [1.1.5] - 2023-12-01
  • [1.1.4] - 2023-08-25