Map

Format

This file has one line with genome information for each locus. Each line has three values, the chromosome number, the locus name, and the physical position (in base-pairs).

Example with four SNP loci on chromosome 1:

1 snp_a 12483939
1 snp_b 192152913
1 snp_c 65429279
1 snp_d 107421759

Input details

If provided, values from this file determines the recombination rate between loci. The file should include all loci present in other files. Only loci on one chromosome should be provided!

The input file for hybrid method, seg_map_file, has the same format as the above. It should include only the subsets of the loci that have been chosen to run the single peeling stage of the hybrid peeling.